Changes Before Version 1.1.8

Moved massage package to transform
Updated makefile to recurse into transform
Fixed makefile to use IZpack instead of IzPack
Updated imports of massage package to use transform
Renamed class files using the word massage to use transform
Renamed class names using the word massage to use transform
Updated all references to classes using the word massage to use transform
Added required method to Transform to indicate whether the transformation can be run
Added checkbox to InputTransform to indicate that the transform is runnable
Renamed methods using the word massage to use transform
Updated all method invocations using the word massage to use transform
Renamed all variables using the word massage to use transform
Added required method to Transform to indicate whether the transformation might have some hidden order dependency with another Transform
Changed all comments using the word massage to use transform
Added required method to Transform for a transform to describe the input and output specification in HTML
Added dialog to display the input and output specifications to TransformStatement
Rewrote popup in TransformStatement to better handle multiple options
Prevented the terminal InputTransform from having its input and output specifications displayed
Made InputTransform automatically supress insertions and querying
Changed TransformEditor to only suppress removals on terminal InputTransform
Changed TransformEditor to only suppress removes on terminal TransformStatement
Update addComponentRow in Compare to add action and item listeners to JCheckBoxes
Added null checks to static toString methods in NullDataElement
Fixed bugs in IZpack that prevented UNIX archives from unpacking
Fixed bug in install.xml that unpacked a UNIX archive with wrong OS
Fixed a bug in IZpack that caused Windows machines to get UNIX archives
Integrated Beanshell into the build environment
Added a simple debugging console for the Comparator using Beanshell
Updated web documentation to remove text references to massages
Renamed files containing the word massage
Removed references to massages in document for creating transforms
Added additional information to document for transforms according to feedback and updates to the template
Removed references to massaegs in document detailing technical information about transforms
Converted changed word documents to postscript
Marked out of date documents as being out of data in the documentation
Removed out of date images from documentation

Changes Before Version 1.1.7

Added Kunststoff look and feel to build system
Changed default look and feel to Kunststoff look and feel
Added buttons to MassageEditor and ObjectiveEditor as an alternative to pressing enter when adding a new massage or objective
Implemented error dialogs when attempting to add or rename a massage or objective with a null or empty name
Made ObjectiveEditor disable the metric box whenever there is no corresponding objective for the metric to be attached to
Removed the objective updating code in ObjectiveEditor that was previously required to instantiate a new objective when the metric box was activated without an objective to attach to
Integrated the latest release of the run manager and model builder
Upgraded the included version of OAA
Integrated a precompiled distribution of IZPack into the build system
Modified IZPack to correctly handle the fileset directive
Created installer file to create a jar installation for JigCell
Updated install files to be compatible with the jar installation
Implemented a cached data element that provides a memory sensitive cache for a data element and spools to disk when memory is low
Changed column headers in ExperimentDataSeriesView, ModelDataSeriesView, and MEOSummaryView
Renamed Add button for adding a massage or objective to New
Removed ability to add new massages or objectives by pressing enter in the combo boxes
Made uneditable columns have a gray background when not selected
Removed ability to change massages or objectives by typing a name in the combo boxes
Made massage and objective combo boxes uneditable
Added availability checks to massages to ensure that the element data is in memory before attempting operations
Added memory locking operation to force a data element to hold its data in memory
Implemented available checks and locking operations in NullDataElement
Set the default width of the massage and objective combo boxes to be the same as InputMassage
Implemented row selection notification in BasicTableSeriesView
Made row selection track across EditableDataSeriesViews
Implemented specialized availability checks and locking operations for EditableDataElement
Implemented specialized availability checks and locking operations for FlippedDataElement
Implemented specialized availability checks and locking operations for CachedDataElement
Added atomic resource replacement to Compare
Converted JigCellRunManagerInputMassage to wrap its data in a CachedDataElement
Made massage and objective order case-insensitive
Added additional files to the list of Comparator documents
Integrated Doug Lea's concurrent package into the build system
Converted MIME type and data flavor manipulations from static synchronizations in Compare to using read/write locks
Converted XML persistence delegate and transient manipulations from static synchronizations in Compare to using read/write locks
Fixed some unguarded accesses to MIME type and data flavor information
Fixed some unguarded accesses to resource maps
Added null checks to a number of accessor functions
Converted resource manipulations from instance synchronizations in Compare to using read/write locks
Fixed an incorrect cast when getting the preferred extensions for a particular instance
Removed null check when running through transients to update an XML encoder
Integrated latest version of Model Builder and Run Manager
Made a buildable version of the included OAA library
Removed Doug Lea's concurrent package from the OAA library
Made antlr buildable as a separate component
Removed antlr from the the OAA library
Added the source code for xerces and log4j to the distribution
Updated license files for several components
Modified component startup scripts to add new libraries
Added build target for conglomerate jigcell class jar file

Changes Before Version 1.1.6

Added icons to Add Result Set..., Delete Selected Thresholds, and Delete Selected Result Sets in Compare^2
Placed Add Result Set..., Delete Selected Thresholds, and Delete Selected Result Sets in Compare^2 toolbar
Added continuously colored view colorer for performance relative to the threshold
Added group colored view colorer for performance relative to the threshold
Added support for manipulating string literals to DataElement
Added string literal type to DataElement.Type
Implement string literal support in NullDataElement
Added support for writing string literals in EditableDataElement
Changed existing users of setValue with a string literal argument of EditableDataElement to use setValueInterpreted
Implemented more efficient support for string literals in EditableDataElement
Improved forceSlice functions of NullDataElement and EditableDataElement
Added support for parsing string literals when constructing an EditableDataElement
Converted all existing users of DataElement.Type to handle string literals
Replaced some uses of DataElement.Type with forced values
Fixed jikes pedantic warning in Compare
Integrated a working jikes CVS snapshot into build system
Updated transient attributes for all binary serializable classes
Added convenience interface for a readable and writeable data source
Added support in Compare to map classes and objects to MIME types
Added support in Compare to map MIME types to file extensions
Added support in Compare to automatically build reverse maps and hierarchical maps for classes, objects, MIME types, and file extensions
Implemented a data source that reads and writes to the clipboard
Implemented helper implementation of Transferable to automatically handle MIME type reporting and basic transfer operations
Made Comparator specific class for representing and manipulating MIME types to more easily describe the transfer format
Required that the Comparator specific class for MIME types be used in all operations requiring a MIME type
Added support for reading and writing the clipboard to EditableDataSeriesView
Added menu options for cutting, copying, and pasting to EditableDataSeriesView
Added proxying system to clipboard to transform objects to and from transferable types
Implemented a transfer proxy in EditableDataSeriesView to produce human readable output for external applications
Implemented a transfer proxy in ExperimentDataSeriesView to produce human readable output for external applications
Added toolbar icons for cutting, copying, and pasting to EditableDataSeriesView
Implemented a transfer proxy in MEOSummaryView to produce human readable output for external applications
Moved definition of the text display cutoff value in BasicTableView to be more accessible to subclasses
Transfer proxy for MEOSummaryView now truncates display of model value
Removed menu options and toolbar icons for cutting and pasting from ObjectiveSumaryView and ModelDataSeriesView since these have no well-defined meaning
Implemented a transfer proxy in ModelDataSeriesView to produce human readable output for external applications
MassageStatement now updates border when name of massage changes
Added ability to rename massages to MassageEditor
Made MassageEditor sort the list of known massages
Added checks to MassageEditor to prevent massages changing names from corrupting the massage tables
Removed a large amount of redundant name manipulation from the event handling of MassageEditor
Fixed regression that caused a newly added massage not to be selected in MassageEditor
Added ability to rename massages to ObjectiveEditor
Made ObjectiveEditor sort the list of known massages
Added checks to ObjectiveEditor to prevent objectives changing names from corrupting the objective tables
Removed a large amount of redundant name manipulation from the event handling of ObjectiveEditor
Removed duplication in code between ObjectiveSummaryView and MEOSummaryView
Changed ObjectiveSummaryView and ModelDataSeriesView to refresh the display when non-generator data changes

Changes Before Version 1.1.5

Replaced some uses of contains with the more efficient hash set
Refactored some table functionality from SimpledDataSeriesView to a new BasicTableView class
Implemented initial view of Compare^2
Updated the configuration file for Compare^2
Implemented loading result sets in Compare^2
Refactored some table functionality from EditableDataSeriesView to BasicTableView
Made columns automatically resize in Compare^2
Moving the threshold column in MEOSummaryView no longer causes the threshold colors to be improperly painted
Made the threshold column remain at the last column index if it is at the last column index when a new column is added
Changed Compare^2 to display No Value when a result is not defined for a particular set
Changed the load functions of EditableDataSeriesView, ModelDataSeriesView, and ObjectiveSummaryView to unconditionally report that changes may have occurred to the generator set
Implemented importing thresholds from an objective set in Compare^2
Made EditableDataGenerator explicitly remove attributes set to null
Implemented exporting thresholds to an objective set in Compare^2
Disabled menu item for saving an objective set in Compare^2 unless an objective set had previously been loaded
Disabled menu item for saving an objective set without specifying a DataSource in Compare^2 unless a DataSource to save to is known
Disabled toolbar icon for saving without specifying a DataSource in EditableDataSeriesView if the corresponding menu item is disabled
Moved strictfp modifier from class to individual methods in MinkwoskiDataGenerator and WOSSDataGenerator
Implemented loading result set groups in Compare^2
Implemented saving result set groups in Compare^2
Added saving result set groups to the last used DataSource in Compare^2
Disabled menu item for saving a result set group without specifying a DataSource in Compare^2 unless a DataSource to save to is known
Implemented clearing the current result set group in Compare^2
Added icons to the Compare^2 menus
Added accelerator keys to the Compare^2 menus
Added a toolbar and toolbar icons to Compare^2
Disabled toolbar icon for saving without specifying a DataSource in Compare^2 if the corresponding menu item is disabled
Fixed EditableDataSeriesView and Compare^2 to record the DataSource for a save operation for use with a later save operation that doesn't specify a DataSource
Added automatic table column resizing on structural changes to the model
Made Compare^2 notify the table when column changes occured
Implemented removing a result set in Compare^2
Implemented removing all result sets in Compare^2
Implemented selecting all rows in Compare^2
Added unselecting all rows to Compare^2
Added inverting the current column selection to Compare^2
Added inverting the current row selection to Compare^2
Moved popup functionality from EditableDataSeriesView to BasicTableView
Implemented replication up and down along thresholds for Compare^2
Added replication within a selection along thresholds for Compare^2
Added new example files for result sets
Added new example files for Compare^2
Implemented clearing all thresholds in Compare^2
Implemented clearing selected thresholds in Compare^2
Changed tests for tests for empty collections to use isEmpty function
Implemented a mechanism in Compare^2 to accept a view colorer for the result set group
Added a view colorer for showing performance relative to threshold
Fixed coloring problems in Compare^2 and MEOSummaryRenderer when the background color wasn't always correctly reset
Fixed coloring in Compare^2 when dragging columns
Made the available set of view colorers configurable
Added a view menu to Compare^2 that allows selection from available view colorers
Added a view colorer that does no coloring
Updated the configuration file for the new view colorers
Moved edit and view cell functionality from the tables to the models
Fixed a number of bugs involving not converting from table column space to model column space
Added edit cell option to all popups without it
Added view cell option to all popups without it
Disabled column replication in popups for columns not supporting editing
Disabled edit cell in popups for columns not supporting editing
Added popup cell editor for massages to ModelDataSeriesView
Added popup cell editor for objectives to ObjectiveSummaryView
Fixed title of popup asking for result set name in Compare^2
Moved threshold functionality from MEOSummaryView to ObjectiveSummaryView
Renamed Load Objective Set... to Open Objective Set... in Compare^2
Moved plot functionality from the tables to the models
Moved column fill functionality from the tables to the models
Refactored some column fill code that was duplicated in Compare^2, EditableDataSeriesView, and ListEditorDialog into BasicTableModel
Refactored some popup handling code that was duplicated in Compare^2 and EditableDataSeriesView into BasicTableView

Changes Before Version 1.1.4

Fixed various minor documentation problems
Made various maintainability improvements (especially to Compare)
Fixed display bugs with Compare splash screen
Fixed potential race condition with Compare splash screen
Moved plotter option definitions from Plotter to PlotterInterace
Added mandatory helper functions for accessing options to ReadableDataSource, WriteableDataSource, and PlotterInterface
Removed some obsolete helper functions for accessing options in EditableDataGenerator and Plotter
Added type checking to all helper functions for option accesses
Implemented helper functions for all option and resource accesses
Modified all direct option and resource accesses to use helper functions
Added centralized repository for data sources
Added support for assertion facility to build configuration
Added debugging preference service to Compare
Made all checked exceptions optionally assert
Fixed exception in MEOSummaryView when computing threshold color for an unevaluated or unvalued objective
Implemented checks in EditableDataElement for legal but non-numeric values
Fixed exception in JigCellRunManagerInputMassage when a legal but non-numeric value was encountered
Added support for abbreviating infinity as inf to EditableDataElement
Made maintainability improvements to EditableDataElement
Added accessor methods for all table column positions
Implemented mechanism for archiving results of comparisons
Significantly increased the number of synchronized sites in functional and massage operations to prevent calculations from being corrupted
MEOSummaryView no longer needs synchronization to start an evaluation task
MassageEditor no longer needs synchronization when changing the current massage
Setting the list of compatible massages is now privately synchronized
MassageEditor no longer needs synchronization when updating the list of massages
Implemented dockable tab toolbars
Added toolbars to all existing tabs
Added several new icons to existing tabs
Fixed exception in ExperimentDataSeriesView when trying to set type to null
Added check to ExperimentDataSeriesView to disallow editing of uneditable cells
Fixed exception in MEOSummaryView when trying to set threshold with the wrong type
Fixed exception in ModelDataSeriesView when trying to set massage with the wrong type
Fixed exception in ObjectiveSummaryView when trying to set objective with the wrong type
Implemented replication up and down along a table column
Implemented replication within a selection along a table column
Fixed exception in MEOSummaryView when threshold was set to a legal but non-numeric value

Changes Before Version 1.1.3

Necessary OAA agents are now automatically started
Fixed bug in BoxMassageContainer that caused results and annotations not to propogate inside
Fixed bug in NullMassageContainer and MassageStatement propogation model that caused clears and flushes to be incorrectly routed in some cases
Fixed bug in MassageStatement container handling that caused some results to propogate out of the container before reaching all massages indirectly controlled by the container
Fixed bug in SelectColumnsMassage that caused notification of updates to sometimes not be propogated after changing the column selection
Added checks to prevent massages in containers from inadvertently forming cycles in the massage graph between containers
Added check to reduce the number of clears that could be caused by a flush in SelectColumnsMassage
Created an example template for performing a massage
Created documentation for adding a massage to the Comparator
Added functions to DataElement and NullDataElement to coerce a single value to a particular type
Fixed bug in forcing a list slice for NullDataElement
Added check in MinkowskiDataGenerator and WOSSDataGenerator to prevent weights from being set to a list
Added check in ModelDataSeriesView to merge duplicate massages
Required Massage to have the same copy control system as Functional
Eliminated copying of massages when tieing to a generator
Eliminated copying of massages when evaluating an objective
Fixed various XML encoding problems for massages
Reworked subinterfaces for DataSource to better align them with planned data source features
Required Massage and Functional to be WriteableDataSources
Implemented a default implementation of data source
Made minor improvements to web documentation
Implemented a data source that reads and writes to files
Made existing tabs take advantage of data source framework
Added a quicksave option that writes to the last used data source

Changes Before Version 1.1.2

Fixed handling of illegal values from JigCell Run Manager
Defined interfaces for generalized data source transfers
Created DataManager for tracking data sources
Converted PlotterInterface to support the WriteableDataSource interface
Converted DataGenerator to support the ReadableDataSource interface
Moved specialized XML persistence delegates into their associated class
Integrated XML persistence tracking functions into Compare
Made EditableDataGenerator support the WriteableDataSource interface
Updated existing plotters and generators to better support the data source framework
Moved DataElementType to DataElement.Type
Fixed various encoding problems with the XML representation
XML encoding errors are now checked for when writing objectives
Added New menu option to all appropriate File menus
Renamed Load option to Open... in all appropriate File menus
Renamed Save option to Save As... in all appropriate File menus
Added Select None option to all appropriate popups and Edit menus
Added Select All option to all appropriate popups and Edit menus
Added Invert Selection option to all appropriate popups and Edit menus
Renamed Delete Row(s) option to Delete Selected in all appropriate popups and Edit menus
Added Add 5 Rows option to all appropriate popups and Edit menus
Renamed Clear All to Delete All in all appropriate Edit menus
Renamed Reset Results to Clear Results in all appropriate Run menus
Added Delete current option to Massage and Objective Editors
Moved defining API for a massage from MassageStatement to Massage
Moved defining API for a function from FunctionalDataGenerator to Functional
Reorganized massages into new package
Implemented support for menu key accelerators
Added accelerators for commonly used menu items
Implemented support for menu icons
Added icon library to Compare
Defined icons for all appropriate menu options
Reorganized menu layout for all tabs and popups
Fixed crash when deleting last massage or objective and then loading more massages or objectives
Moved defining API for a massage container to an interface called MassageContainer and renamed the old MassageContainer to NullMassageContainer
Added contrib package to the build for future third-party contributions
Fixed bug in BoxMassageContainer that would cause it to hold two InputMassages a fter a copy
Fixed bug in MEOSummaryView that prevented update events from being sent out
Fixed bug in MassageStatement that would crash when inserting after or deleting an InputMassage that should have had the context menu disabled
Moved functionality in MassageStatement that is only used in InputMassage to InputMassage

Changes Before Version 1.1.1

Redid Select Columns UI to have graphical column picker
Slightly adjusted layout of many components
Updated massages to support existing annotations
Added element name and size annotations
Implemented annotation system for generators to describe the expected contents of their element
Updated build system to automate release process
Updated documentation available in build
Fixed SelectColumns massage when selecting only one column
Added additional error checking when writing XML files
Implemented splash screen while loading
Added graphic to about dialog
Fixed a possible thread safety issue with adding comparator tabs
Added support for infinity, -infinity, and nan when parsing from text
PTPlotBridge now silently discards unplottable points
Implemented Extrema Test massage
Implemented Boolean Relational objective
Drew system diagrams for Comparator
Added file picker to Input from JigCell Run Manager massage
Added file picker to Read from File massage
Added file picker to Write to File massage
Created configuration framework for manipulating configurations
Converted configuration file to XML
Eliminated tab identification by number
Added Clear option to model input
Added Clear option to objective input
Added Clear option to massage editor
Added Clear option to objective editor
Implemented massage container framework
Implemented Box massage container
Massage editor now sorts massages by name alphabetically
Objective editor now sorts metrics by name alphabetically
Made massage statement context menu configurable

Changes Before Version 1.1.0

Fixed freeze when trying to plot without data in objective view
Added UI to massage editor for deleting a massage step
Added UI to massage editor for inserting before or after a massage step
Fixed massage editing after loading