jigcell.compare.cellcycle
Class CellCycleExperimentView

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JPanel
                  jigcell.compare.ui.PanelTab
                      jigcell.compare.ui.DataEditorPanelTab
                          jigcell.compare.views.BasicTableView
                              jigcell.compare.views.SeriesView
                                  jigcell.compare.views.EditableSeriesView
                                      jigcell.compare.cellcycle.CellCycleExperimentView

All Implemented Interfaces:

java.awt.event.MouseListener, java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.event.ListSelectionListener, ITab, IBasicTableHost, ICellEditorTab, IClipboardTab, IDataEditorTab, INameFinderTab, IRowEditorTab, IRowSelectionTab

public class CellCycleExperimentView
extends EditableSeriesView

An editable display for working with experimental data.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

See Also:

Serialized Form

Nested Class Summary

protected class	CellCycleExperimentView.ExperimentModel Table model for the data in an ExperimentDataSeriesView.
protected class	CellCycleExperimentView.ExperimentViewRenderer Colors cells when a type error is detected.

Nested classes/interfaces inherited from class jigcell.compare.views.EditableSeriesView

EditableSeriesView.EditableSeriesModel

Nested classes/interfaces inherited from class jigcell.compare.views.SeriesView

SeriesView.SeriesModel, SeriesView.SeriesViewTransferer

Nested classes/interfaces inherited from class jigcell.compare.ui.DataEditorPanelTab

DataEditorPanelTab.ReadHelper

Nested classes/interfaces inherited from class javax.swing.JPanel

javax.swing.JPanel.AccessibleJPanel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

static java.lang.String	CONFIG_BACKGROUNDTYPEERROR Property key for the type error background
static java.lang.String	CONFIG_TYPES Property key for generator types
static java.awt.Color	DEFAULT_BACKGROUNDTYPEERROR Default background color for cells with type errors
protected static java.lang.String	MESSAGE_TYPEERROR Error message when a type checker fails to load
static java.lang.String	SELECTIONGROUP_CELLCYCLE Selection group for the cellcycle components
protected ListComboBoxModel	typeModel Display for list of known types
protected java.util.List	types List of known types

Fields inherited from class jigcell.compare.views.EditableSeriesView

CONFIG_PLOTTER, FILTER_EXPERIMENT, model, plotter, POPUP_PLOTTER

Fields inherited from class jigcell.compare.views.SeriesView

CONFIG_TEXTCUTOFF, generators, textCutoff, VALUE_NOTAVAILABLE

Fields inherited from class jigcell.compare.views.BasicTableView

clipboard, lastSearchName, popup, POPUP_DEFAULT, popupPoint, printer, RESOURCE_LASTTABLESELECTION, RESOURCE_TABLESELECTION, selectionGroup, table

Fields inherited from class jigcell.compare.ui.DataEditorPanelTab

CONFIG_RECENTSOURCE, CONFIG_RECENTSOURCECOUNT, exception, manager, MENU_OPENRECENT, MENUBAR_DEFAULT, menuManager, menus, MESSAGE_LOADERROR, MESSAGE_LOADING, MESSAGE_SAVEERROR, OPTION_CHOOSEROPEN, OPTION_CHOOSERSAVE, PROPERTY_RECENTSOURCETARGET, READ_LOCK, recentReadablesMenu, TOOLBAR_DEFAULT

Fields inherited from class jigcell.compare.ui.PanelTab

compare, configMarkers, PATH_ABOUT, PATH_DESCRIPTION_ABOUT, tabName

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface jigcell.compare.ITab

CONFIG_TABNAME, STATE_ENDINITIALIZE, STATE_ENDUI, STATE_INITIALIZE, STATE_RUNNING, STATES

Fields inherited from interface jigcell.compare.ITab

CONFIG_TABNAME, STATE_ENDINITIALIZE, STATE_ENDUI, STATE_INITIALIZE, STATE_RUNNING, STATES

Fields inherited from interface jigcell.compare.ITab

CONFIG_TABNAME, STATE_ENDINITIALIZE, STATE_ENDUI, STATE_INITIALIZE, STATE_RUNNING, STATES

Fields inherited from interface jigcell.compare.ITab

CONFIG_TABNAME, STATE_ENDINITIALIZE, STATE_ENDUI, STATE_INITIALIZE, STATE_RUNNING, STATES

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

CellCycleExperimentView(Compare compare, java.lang.String configMarker)
Creates a new table view with the ability to display experiment data.

Method Summary

IConfigEditor	createConfigEditor() Creates a configuration editor for this tab or null if this tab does not support graphical configuration.
protected void	createUI() Creates an interface for the view.
protected void	createUI(CellCycleExperimentView.ExperimentModel model)
void	importNamesFromRunFile() Prompts the user for a run file on their disk and then creates new experiments for each run in the run file.
void	importNamesFromRunFile(jigcell.runsupport.RunFile runFile) Creates new experiments for each run in the run file.
void	readConfiguration(java.lang.String state) Reads the view configuration from the Comparator.
protected void	readInternal(java.lang.Object readResult) Processes data that has been read from some external source.

Methods inherited from class jigcell.compare.views.EditableSeriesView

addRow, addRows, clear, clearAndNew, clipboardCut, clipboardCut, clipboardPaste, createFileChooser, createGenerators, createPopup, createUI, deleteRow, deleteRows, editCell, fillDown, fillSelected, fillUp, initialize, insertRow, insertRows, moveRowsDown, moveRowsUp, plotCell, preparePopup, propertyChange, readNotify, setCurrentSource, viewCell, write

Methods inherited from class jigcell.compare.views.SeriesView

clipboardCopy, clipboardCopy, copyGenerator, createUI, findByName, getRowCount, getRowData, initializeData, print

Methods inherited from class jigcell.compare.views.BasicTableView

clipboardWrite, createUI, findByName, findByName, findByName, findByName, getColumnCount, getColumnData, getLastSearchName, getSelectedColumns, getSelectedRows, getSelectionGroup, getTable, mouseClicked, mouseEntered, mouseExited, mousePressed, mouseReleased, selectAll, selectInvert, selectInvertColumns, selectInvertRows, selectNone, setSelectedColumns, setSelectedRows, setSelectionGroup, valueChanged

Methods inherited from class jigcell.compare.ui.DataEditorPanelTab

addRecentSource, createMenus, createReadableRecentSourceMenuItems, createTools, getCurrentSource, getRecentSource, getRecentSourceCount, load, loadDirect, loadRecentSource, save, saveDirect

Methods inherited from class jigcell.compare.ui.PanelTab

createAboutDialog, createAboutDialogForTab, getCompare, getConfigForView, getConfigMarkers, getHostIdentifier, getName

Methods inherited from class javax.swing.JPanel

getAccessibleContext, getUI, getUIClassID, paramString, setUI, updateUI

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOpaque, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, repaint, repaint, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, revalidate, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBackground, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setForeground, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface jigcell.compare.ITab

createAboutDialog, getName

Methods inherited from interface jigcell.compare.ui.IClipboardTab

clipboardCopy, clipboardCopy

Methods inherited from interface jigcell.compare.ITab

createAboutDialog, getName

Methods inherited from interface jigcell.compare.ui.IDataEditorTab

getCurrentSource, load, loadDirect, save, saveDirect

Methods inherited from interface jigcell.compare.ITab

createAboutDialog, getName

Methods inherited from interface jigcell.compare.ui.IRowEditorTab

getRowCount, getRowData

Methods inherited from interface jigcell.compare.ITab

createAboutDialog, getName

Methods inherited from interface jigcell.compare.ui.IRowSelectionTab

getSelectedRows, selectAll, selectInvert, selectInvertRows, selectNone, setSelectedRows

Methods inherited from interface jigcell.compare.ui.IBasicTableHost

getCompare, getConfigMarkers, getHostIdentifier

Field Detail

DEFAULT_BACKGROUNDTYPEERROR

public static final java.awt.Color DEFAULT_BACKGROUNDTYPEERROR

Default background color for cells with type errors

CONFIG_BACKGROUNDTYPEERROR

public static final java.lang.String CONFIG_BACKGROUNDTYPEERROR

Property key for the type error background

See Also:

Constant Field Values

CONFIG_TYPES

public static final java.lang.String CONFIG_TYPES

Property key for generator types

See Also:

Constant Field Values

SELECTIONGROUP_CELLCYCLE

public static final java.lang.String SELECTIONGROUP_CELLCYCLE

Selection group for the cellcycle components

See Also:

Constant Field Values

MESSAGE_TYPEERROR

protected static final java.lang.String MESSAGE_TYPEERROR

Error message when a type checker fails to load

See Also:

Constant Field Values

types

protected java.util.List types

List of known types

typeModel

protected ListComboBoxModel typeModel

Display for list of known types

Constructor Detail

CellCycleExperimentView

public CellCycleExperimentView(Compare compare,
                               java.lang.String configMarker)

Creates a new table view with the ability to display experiment data.

Parameters:

compare - Comparator backend to interface with

configMarker - Marker for retrieving configuration information from Comparator backend

Method Detail

createConfigEditor

public IConfigEditor createConfigEditor()

Creates a configuration editor for this tab or null if this tab does not support graphical configuration.

Specified by:

createConfigEditor in interface ITab

Overrides:

createConfigEditor in class EditableSeriesView

importNamesFromRunFile

public void importNamesFromRunFile()

Prompts the user for a run file on their disk and then creates new experiments for each run in the run file.

importNamesFromRunFile

public void importNamesFromRunFile(jigcell.runsupport.RunFile runFile)

Creates new experiments for each run in the run file. The names of the experiments come from the names of the runs.

Parameters:

runFile - Run file

readConfiguration

public void readConfiguration(java.lang.String state)

Reads the view configuration from the Comparator.

Specified by:

readConfiguration in interface ITab

Overrides:

readConfiguration in class EditableSeriesView

Parameters:

state - Current state of the view

createUI

protected void createUI()

Creates an interface for the view.

Overrides:

createUI in class EditableSeriesView

createUI

protected void createUI(CellCycleExperimentView.ExperimentModel model)

See Also:

BasicTableView.createUI(jigcell.compare.ui.BasicTable.BasicTableModel)

readInternal

protected void readInternal(java.lang.Object readResult)
                     throws java.lang.Exception

Processes data that has been read from some external source.

Overrides:

readInternal in class EditableSeriesView

Parameters:

readResult - Data

Throws:

java.lang.Exception