Overview  Package  Class  Use  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES    

Serialized Form

Package jigcell.compare
Package jigcell.compare.cellcycle

Class jigcell.compare.cellcycle.BuddingYeastPhenotypeObjective extends GenericPhenotypeObjective implements Serializable

Class jigcell.compare.cellcycle.BuddingYeastScanTransform extends GenericScanTransform implements Serializable

Class jigcell.compare.cellcycle.CellCycleDataDialog extends SeriesDialog implements Serializable

Serialized Fields

transformElement

IDataElement transformElement
Data element of the transform result

Class jigcell.compare.cellcycle.CellCycleDataDialog.DataModel extends SeriesDialog.SeriesModel implements Serializable

Serialized Fields

COLUMN_MODELVALUE

BasicTable.BasicTableModel.Marker COLUMN_MODELVALUE
Model value column

Class jigcell.compare.cellcycle.CellCycleExperimentView extends EditableSeriesView implements Serializable

Serialized Fields

types

java.util.List types
List of known types

typeModel

ListComboBoxModel typeModel
Display for list of known types

Class jigcell.compare.cellcycle.CellCycleExperimentView.ExperimentModel extends EditableSeriesView.EditableSeriesModel implements Serializable

Serialized Fields

COLUMN_TYPE

BasicTable.BasicTableModel.Marker COLUMN_TYPE
Type column

Class jigcell.compare.cellcycle.CellCycleExperimentView.ExperimentViewRenderer extends BasicTable.BasicRenderer implements Serializable

Class jigcell.compare.cellcycle.CellCycleObjectiveView extends ObjectiveSeriesView implements Serializable

Serialized Fields

errorViewer

EvaluationErrorViewer errorViewer
Displays errors encountered during evaluation

context

ITransformContext context
Context for performing transform evaluations

Class jigcell.compare.cellcycle.CellCycleObjectiveView.ObjectiveModel extends ObjectiveSeriesView.ObjectiveSeriesModel implements Serializable

Serialized Fields

COLUMN_MODELVALUE

BasicTable.BasicTableModel.Marker COLUMN_MODELVALUE
Transform value column name

COLUMN_TYPE

BasicTable.BasicTableModel.Marker COLUMN_TYPE
Type column name

Class jigcell.compare.cellcycle.CellCycleObjectiveView.ObjectiveViewRenderer extends ObjectiveSeriesView.ObjectiveSeriesRenderer implements Serializable

Class jigcell.compare.cellcycle.CellCycleReportGenerator extends PDFPrinterDataSource implements Serializable

Class jigcell.compare.cellcycle.CellCycleTransformView extends EditableSeriesView implements Serializable

Serialized Fields

errorViewer

EvaluationErrorViewer errorViewer
Displays errors encountered during evaluation

transforms

IDataGeneratorList transforms
List of known transforms

context

ITransformContext context
Context for performing transform evaluations

transformModel

ListComboBoxModel transformModel
Display for list of known transforms

model

CellCycleTransformView.TransformModel model
Data model of the generators

Class jigcell.compare.cellcycle.CellCycleTransformView.TransformModel extends EditableSeriesView.EditableSeriesModel implements Serializable

Serialized Fields

COLUMN_MODELVALUE

BasicTable.BasicTableModel.Marker COLUMN_MODELVALUE
Transform value column

COLUMN_TRANSFORM

BasicTable.BasicTableModel.Marker COLUMN_TRANSFORM
Transform column

COLUMN_TYPE

BasicTable.BasicTableModel.Marker COLUMN_TYPE
Type column

Class jigcell.compare.cellcycle.CellCycleTransformView.TransformViewRenderer extends BasicTable.BasicRenderer implements Serializable

Class jigcell.compare.cellcycle.GenericPhenotypeObjective extends Objective implements Serializable

Class jigcell.compare.cellcycle.GenericScanTransform extends Transform implements Serializable

Class jigcell.compare.cellcycle.JigCellRunManagerTransform extends Transform implements Serializable

Class jigcell.compare.cellcycle.OAAConnector extends PanelTab implements Serializable

Serialized Fields

beanshell

bsh.Interpreter beanshell
Interpreter for commands

myOaa

com.sri.oaa2.lib.LibOaa myOaa
OAA connection

partWriters

java.util.Map partWriters
Currently open file parts

agentName

java.lang.String agentName
Agent name to expose

Class jigcell.compare.cellcycle.WildtypeScanTransform extends Transform implements Serializable

Package jigcell.compare.compare2

Class jigcell.compare.compare2.Compare2 extends BasicTableView implements Serializable

Serialized Fields

trackSetPosition

boolean trackSetPosition
Whether to track the column position when adding a set

viewColorerGroup

javax.swing.ButtonGroup viewColorerGroup
Group of available view colorers

model

Compare2Model model
Data model of the comparisons

objectives

IDataGeneratorMap objectives
Objective set used for comparison thresholds

colorerMode

int colorerMode
Colorer display mode

colorer

IViewColorer colorer
Current view colorer being used

currentRankings

javax.swing.JCheckBoxMenuItem currentRankings
Menu item to toggle rankings display

comparisons

java.util.List comparisons
List[IResultSetMap] of comparisons

experimentBaseNames

java.util.List experimentBaseNames
List[IDataGeneratorCollection.Key] of the keys of experiments used in the objective set

experimentNames

java.util.List experimentNames
List[IDataGeneratorCollection.Key] of the keys of results used in comparisons

colorers

java.util.Map colorers
Map[MenuItem,IViewColorer] of the triggers for the loaded view colorers

comparisonNames

java.util.Map comparisonNames
Map[IResultSetMap,String] of comparisons to the set name

experimentComparisons

java.util.Map experimentComparisons
Map[IDataGeneratorCollection.Key,String] of the keys of experiments to the comparison type

experimentThresholds

java.util.Map experimentThresholds
Map[IDataGeneratorCollection.Key,String] of the keys of experiments to the threshold

zoomDialog

ResultViewZoom zoomDialog
Dialog view for zoom popup

resizeTableColumnsRunnable

java.lang.Runnable resizeTableColumnsRunnable
Runnable for resizing the table columns after all events have been processed.

thresholdDialog

ThresholdEditor thresholdDialog
Dialog view for threshold editor

currentSourceThreshold

IWriteableDataSource currentSourceThreshold
Data source the current content should be saved to

Class jigcell.compare.compare2.Compare2Model extends BasicTable.BasicTableModel implements Serializable

Serialized Fields

COLUMN_COMPARISONTYPE

BasicTable.BasicTableModel.Marker COLUMN_COMPARISONTYPE
Comparison type column

COLUMN_NAME

BasicTable.BasicTableModel.Marker COLUMN_NAME
Name column

COLUMN_THRESHOLD

BasicTable.BasicTableModel.Marker COLUMN_THRESHOLD
Threshold column

allowThresholdEdit

boolean allowThresholdEdit
Whether threholds can be edited

compare

Compare compare
Comparator for model users

manager

InterfaceBuilder manager
Provides interface help for the view

comparisons

java.util.List comparisons
List[IResultSetMap] of comparisons

experimentNames

java.util.List experimentNames
List[IDataGeneratorCollection.Key] of the keys of results used in comparisons

comparisonNames

java.util.Map comparisonNames
Map[IResultSetMap,String] of comparisons to the set name

experimentComparisons

java.util.Map experimentComparisons
Map[IDataGeneratorCollection.Key,String] of the keys of experiments to the comparison type

experimentThresholds

java.util.Map experimentThresholds
Map[IDataGeneratorCollection.Key,String] of the keys of experiments to the threshold

Class jigcell.compare.compare2.ImmediateHistoryRelativeViewColorer extends TriColorViewColorer implements Serializable

Class jigcell.compare.compare2.ResultViewZoom extends javax.swing.JDialog implements Serializable

Serialized Fields

updateCount

int updateCount
Whether the view zoom is currently being updated

view

Compare2 view
View containing the data

zoomImage

javax.swing.ImageIcon zoomImage
Image for display in a zoom window

zoomDialogUpdateRunnable

java.lang.Runnable zoomDialogUpdateRunnable
Runnable for updating the zoom display after all events have been processed.

Class jigcell.compare.compare2.ThresholdAbsoluteViewColorer extends TriColorViewColorer implements Serializable

Class jigcell.compare.compare2.ThresholdEditor extends javax.swing.JDialog implements Serializable

Serialized Fields

compare

Compare compare
Comparator of parent view

model

Compare2Model model
View model

thresholdDocument

javax.swing.text.Document thresholdDocument
Document storing the threshold value

originalThreshold

double originalThreshold
Threshold value before any adjustments were made

currentExperiment

IDataGeneratorCollection.Key currentExperiment
Experiment currently being edited

manager

InterfaceBuilder manager
Manages the interface for this editor

thresholdSlider

javax.swing.JSlider thresholdSlider
Slider for adjusting the threshold value

experimentBoxModel

ListComboBoxModel experimentBoxModel
Model for the list of experiments

experimentThresholds

java.util.Map experimentThresholds
Map[IDataGeneratorCollection.Key,String] of the keys of experiments to the threshold

thresholdFormat

java.text.DecimalFormat thresholdFormat
Formatter for displaying threshold values

Class jigcell.compare.compare2.ThresholdRelativeViewColorer extends TriColorViewColorer implements Serializable

Serialized Fields

groups

int groups
Number of groups to divide into

Class jigcell.compare.compare2.TriColorViewColorer extends ViewColorer implements Serializable

Class jigcell.compare.compare2.ViewColorer extends BasicTable.BasicRenderer implements Serializable

Serialized Fields

model

Compare2Model model
The view model

mode

int mode
Display mode

Package jigcell.compare.contrib

Class jigcell.compare.contrib.DispatchedTransformHelper extends TransformHelper implements Serializable

Serialized Fields

dispatcher

MethodDispatcher dispatcher
Method dispatcher for this transform

Class jigcell.compare.contrib.DispatchedTransformTemplate extends DispatchedTransformHelper implements Serializable

Class jigcell.compare.contrib.ObjectiveHelper extends Objective implements Serializable

Class jigcell.compare.contrib.ObjectiveTemplate extends ObjectiveHelper implements Serializable

Class jigcell.compare.contrib.TransformHelper extends Transform implements Serializable

Class jigcell.compare.contrib.TransformTemplate extends TransformHelper implements Serializable

Package jigcell.compare.data

Class jigcell.compare.data.CachedDataElement extends DataElement implements Serializable

Serialization Methods

readObject

private void readObject(java.io.ObjectInputStream objectIn)
                 throws java.io.IOException,
                        java.lang.ClassNotFoundException
Throws:
java.io.IOException
java.lang.ClassNotFoundException

writeObject

private void writeObject(java.io.ObjectOutputStream objectOut)
                  throws java.io.IOException
Throws:
java.io.IOException

Class jigcell.compare.data.DataElement extends Transferer implements Serializable

Class jigcell.compare.data.DataGenerator extends DataSource implements Serializable

Class jigcell.compare.data.EditableDataElement extends DataElement implements Serializable

Serialized Fields

prototypeChild

EditableDataElement prototypeChild
Prototypical instance of a subelement

Class jigcell.compare.data.EditableDataGenerator extends DataGenerator implements Serializable

Class jigcell.compare.data.FlippedDataElement extends DataElement implements Serializable

Serialized Fields

tie

IDataElement tie
Original element

element

IEditableDataElement element
Untied element

index

long index
Index within the flip to access

Class jigcell.compare.data.MethodDispatcher.NoDispatchableMethodException extends java.lang.NoSuchMethodException implements Serializable

Class jigcell.compare.data.PackedDoubleDataElement extends EditableDataElement implements Serializable

Serialized Fields

values

double[] values
Element values

scalar

java.lang.Double scalar
Placeholder for scalar value

length

int length
Element length

size

int size
Element pack size

Class jigcell.compare.data.PackedTreeDataElement extends TreeDataElement implements Serializable

Serialized Fields

size

long size
Element packing size

Class jigcell.compare.data.PackedTreeDataElement2 extends PackedTreeDataElement implements Serializable

Serialized Fields

values

it.unimi.dsi.fastutil.longs.ModifiedLong2ObjectAVLTreeMap values
Element values

Class jigcell.compare.data.ProgrammableDataGenerator extends EditableDataGenerator implements Serializable

Serialized Fields

allowDescriptionQuery

boolean allowDescriptionQuery
Whether this generator can have its input description queried

Class jigcell.compare.data.SparseTreeDataElement extends TreeDataElement implements Serializable

Class jigcell.compare.data.SparseTreeDataElement2 extends SparseTreeDataElement implements Serializable

Serialized Fields

values

it.unimi.dsi.fastutil.longs.ModifiedLong2ObjectAVLTreeMap values
Element values

Class jigcell.compare.data.TreeDataElement extends EditableDataElement implements Serializable

Serialized Fields

length

long length
Element length

values

java.util.SortedMap values
Element values

Package jigcell.compare.impl

Class jigcell.compare.impl.ClipboardDataSource extends OwnedDataSource implements Serializable

Class jigcell.compare.impl.ComparatorDataFlavor extends java.awt.datatransfer.DataFlavor implements Serializable

Serialization Methods

readExternal

public void readExternal(java.io.ObjectInput arg0)
                  throws java.io.IOException,
                         java.lang.ClassNotFoundException
Throws:
java.io.IOException
java.lang.ClassNotFoundException

writeExternal

public void writeExternal(java.io.ObjectOutput arg0)
                   throws java.io.IOException
Throws:
java.io.IOException

Class jigcell.compare.impl.Config extends Transferer implements Serializable

Serialized Fields

configs

java.util.HashMap configs
Map of marker-configurator pairs

values

java.util.HashMap values
Map of key-value pairs

CONFIG_LOCK

EDU.oswego.cs.dl.util.concurrent.ReentrantWriterPreferenceReadWriteLock CONFIG_LOCK
Lock for manipulating configuration data

Class jigcell.compare.impl.DataManager extends Transferer implements Serializable

Serialized Fields

preferredSources

java.util.Map preferredSources
Preferred data source for each class

SOURCE_LOCK

EDU.oswego.cs.dl.util.concurrent.ReadWriteLock SOURCE_LOCK
Lock for manipulating sources

readables

java.util.Set readables
Readable data sources

writeables

java.util.Set writeables
Writeable data sources

Class jigcell.compare.impl.DataSource extends Transferer implements Serializable

Serialized Fields

OPTIONS_LOCK

EDU.oswego.cs.dl.util.concurrent.ReadWriteLock OPTIONS_LOCK
Lock for manipulating source options

Class jigcell.compare.impl.FileDataSource extends DataSource implements Serializable

Class jigcell.compare.impl.OwnedDataSource extends DataSource implements Serializable

Class jigcell.compare.impl.PDFPrinterDataSource extends PrinterDataSource implements Serializable

Class jigcell.compare.impl.PrinterDataSource extends OwnedDataSource implements Serializable

Class jigcell.compare.impl.RawFileDataSource extends FileDataSource implements Serializable

Class jigcell.compare.impl.SystemPrinterDataSource extends PrinterDataSource implements Serializable

Class jigcell.compare.impl.Transferer extends javax.swing.TransferHandler implements Serializable

Class jigcell.compare.impl.XMLFileDataSource extends RawFileDataSource implements Serializable

Package jigcell.compare.objective

Class jigcell.compare.objective.BooleanRelationalObjective extends Objective implements Serializable

Class jigcell.compare.objective.MetricObjective extends Objective implements Serializable

Class jigcell.compare.objective.MinkowskiObjective extends Objective implements Serializable

Serialized Fields

p

double p
Power

Class jigcell.compare.objective.Objective extends ProgrammableDataGenerator implements Serializable

Class jigcell.compare.objective.ScriptEvaluationObjective extends Objective implements Serializable

Class jigcell.compare.objective.WOSSObjective extends Objective implements Serializable

Package jigcell.compare.objectiveui

Class jigcell.compare.objectiveui.DimensionWeightEditorDialog extends WeightEditorDialog implements Serializable

Serialized Fields

generator

IDimensionWeightObjective generator
Currently selected generator

Class jigcell.compare.objectiveui.DimensionWeightEditorDialog.DimensionWeightModel extends WeightEditorDialog.WeightModel implements Serializable

Class jigcell.compare.objectiveui.ElementWeightEditorDialog extends WeightEditorDialog implements Serializable

Serialized Fields

generator

IElementWeightObjective generator
Currently selected generator

Class jigcell.compare.objectiveui.ElementWeightEditorDialog.ElementWeightModel extends WeightEditorDialog.WeightModel implements Serializable

Serialized Fields

COLUMN_REFERENCE

BasicTable.BasicTableModel.Marker COLUMN_REFERENCE
Weight reference column

Class jigcell.compare.objectiveui.WeightEditorDialog extends SeriesEditorDialog implements Serializable

Serialized Fields

referenceElement

IDataElement referenceElement
Data element of the reference selection

manager

InterfaceBuilder manager
Interface manager for this dialog

defaultModel

ListComboBoxModel defaultModel
Choice for available weight defaults

Class jigcell.compare.objectiveui.WeightEditorDialog.WeightModel extends SeriesEditorDialog.SeriesEditorModel implements Serializable

Package jigcell.compare.plotter

Class jigcell.compare.plotter.JPlotBridge extends Plotter implements Serializable

Class jigcell.compare.plotter.PlotException extends java.lang.Exception implements Serializable

Class jigcell.compare.plotter.Plotter extends DataSource implements Serializable

Serialized Fields

data

IDataElement data
Data aggregate

Class jigcell.compare.plotter.PTPlotBridge extends Plotter implements Serializable

Package jigcell.compare.tests

Class jigcell.compare.tests.ConstantDataSource extends DataSource implements Serializable

Serialized Fields

data

java.lang.Object data
Value of data source

Class jigcell.compare.tests.MethodDispatcherTests.DispatchedTransform extends Transform implements Serializable

Serialized Fields

dispatcher

MethodDispatcher dispatcher
Method dispatcher for this transform

Class jigcell.compare.tests.ModelBuilderPlugin extends PanelTab implements Serializable

Serialized Fields

modelBuilder

jigcell.modelbuilder.ModelBuilder modelBuilder
Model builder application

Class jigcell.compare.tests.RunManagerPlugin extends PanelTab implements Serializable

Serialized Fields

runManager

jigcell.runmanager.RunManager runManager
Run manager application

Package jigcell.compare.transform

Class jigcell.compare.transform.BoxTransformContainer extends TransformContainer implements Serializable

Class jigcell.compare.transform.ConstantTransform extends Transform implements Serializable

Serialized Fields

value

IDataElement value
Value to generate

displayComponent

javax.swing.JComponent displayComponent
Information to display for transform interface

Class jigcell.compare.transform.ExtremaTestTransform extends Transform implements Serializable

Class jigcell.compare.transform.FileTransform extends Transform implements Serializable

Class jigcell.compare.transform.InputTransform extends Transform implements Serializable

Class jigcell.compare.transform.ReadFromFileTransform extends FileTransform implements Serializable

Class jigcell.compare.transform.ScriptEvaluationTransform extends Transform implements Serializable

Class jigcell.compare.transform.SelectColumnsTransform extends Transform implements Serializable

Class jigcell.compare.transform.Transform extends ProgrammableDataGenerator implements Serializable

Serialized Fields

allowContextInsertion

boolean allowContextInsertion
Whether transforms can be inserted around this transform through a context menu

allowContextRemoval

boolean allowContextRemoval
Whether this transform can be removed through a context menu

container

ITransformContainer container
Transform container

Class jigcell.compare.transform.TransformContainer extends Transform implements Serializable

Class jigcell.compare.transform.TransformEvaluationTransform extends Transform implements Serializable

Class jigcell.compare.transform.WriteToFileTransform extends FileTransform implements Serializable

Package jigcell.compare.transform.annotation

Class jigcell.compare.transform.annotation.ColumnCountAnnotationDescriptor extends ElementSizeAnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.ColumnNameAnnotationDescriptor extends ElementNameAnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.CommentAnnotationDescriptor extends TransformAnnotation.AnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.ElementNameAnnotationDescriptor extends TransformAnnotation.AnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.ElementSizeAnnotationDescriptor extends TransformAnnotation.AnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.ElementTypeAnnotationDescriptor extends TransformAnnotation.AnnotationDescriptor implements Serializable

Class jigcell.compare.transform.annotation.TransformAnnotation extends Transferer implements Serializable

Serialized Fields

descriptorMap

java.util.Map descriptorMap
Storage for annotation descriptors

recordMap

java.util.SortedMap recordMap
Storage for annotation records

valueMap

java.util.SortedMap valueMap
Storage for annotation values

Class jigcell.compare.transform.annotation.TransformAnnotation.AnnotationDescriptor extends Transferer implements Serializable

Package jigcell.compare.transformui

Class jigcell.compare.transformui.SelectColumnsInterface.SelectedModel extends javax.swing.AbstractListModel implements Serializable

Package jigcell.compare.ui

Class jigcell.compare.ui.BasicTable extends javax.swing.JTable implements Serializable

Serialized Fields

model

BasicTable.BasicTableModel model
Table model

Class jigcell.compare.ui.BasicTable.BasicEditor extends javax.swing.DefaultCellEditor implements Serializable

Serialized Fields

host

IBasicTableHost host
Host view of this table

Class jigcell.compare.ui.BasicTable.BasicRenderer extends javax.swing.table.DefaultTableCellRenderer implements Serializable

Serialized Fields

host

IBasicTableHost host
Host view of this table

Class jigcell.compare.ui.BasicTable.BasicTableModel extends javax.swing.table.AbstractTableModel implements Serializable

Serialized Fields

columnWeights

double[] columnWeights
Weights for resizing columns

markers

BasicTable.BasicTableModel.Marker[] markers
Column markers of the table

Class jigcell.compare.ui.BasicTable.ButtonEditor extends javax.swing.AbstractCellEditor implements Serializable

Serialized Fields

column

int column
Column being edited

row

int row
Row being edited

button

javax.swing.JButton button
Button

value

java.lang.Object value
Editor value

Class jigcell.compare.ui.BasicTable.ButtonRenderer extends javax.swing.JButton implements Serializable

Class jigcell.compare.ui.CompareFrontEnd.SplashScreen extends javax.swing.JWindow implements Serializable

Serialized Fields

SPLASH_LOCK

java.lang.Object SPLASH_LOCK
Lock for controlling the splash screen

SIZE_MINIMUM

java.awt.Dimension SIZE_MINIMUM
Minimum size splash to display

messageLabel

javax.swing.JLabel messageLabel
Status display

message

java.lang.String message
Status text to update to

timer

javax.swing.Timer timer
Delay timer

UPDATE_LOCK

java.lang.Object UPDATE_LOCK
Lock for controlling update manipulation

Class jigcell.compare.ui.ConfigEditor extends javax.swing.JDialog implements Serializable

Serialized Fields

compare

Compare compare
Parent of view

rootConfig

Config rootConfig
Source of config information

tabConfig

Config tabConfig
Destination for config information

manager

InterfaceBuilder manager
Manages the interface for the dialog

markers

java.util.List markers
Configuration markers for the owner of this dialog

options

java.util.Map options
Options in this dialog

Class jigcell.compare.ui.DataEditorPanelTab extends PanelTab implements Serializable

Serialized Fields

menus

javax.swing.JMenu[] menus
The menus that this view is presenting

exception

ExceptionRecorder exception
Exception handler

manager

InterfaceBuilder manager
Provides interface help for the view

recentReadablesMenu

javax.swing.JMenu recentReadablesMenu
Menu listing the recently used readable data sources

menuManager

MenuBuilder menuManager
Creates menus for the view

READ_LOCK

java.lang.Object READ_LOCK
Lock for temporary read result

currentSource

IWriteableDataSource currentSource
Data source the current content should be saved to

Class jigcell.compare.ui.EditorDialog extends ViewerDialog implements Serializable

Class jigcell.compare.ui.FindAccessory extends javax.swing.Box implements Serializable

Serialized Fields

compare

CompareFrontEnd compare
Comparator display this accessory is currently installed in

tab

INameFinderTab tab
Tab this accessory is currently installed in

foundIndicator

javax.swing.JLabel foundIndicator
Indicator for an unsuccessful find

textField

javax.swing.JTextField textField
Field for search text entry

Class jigcell.compare.ui.ListComboBoxModel extends javax.swing.AbstractListModel implements Serializable

Serialized Fields

list

java.util.List list
Items contained in this model

selected

java.lang.Object selected
Currently selected item

Class jigcell.compare.ui.MemoryMonitorAccessory extends javax.swing.JPanel implements Serializable

Serialized Fields

usedMemory

javax.swing.JProgressBar usedMemory
Memory monitor

timer

javax.swing.Timer timer
Update timer

Class jigcell.compare.ui.PanelTab extends javax.swing.JPanel implements Serializable

Serialized Fields

compare

Compare compare
Parent Comparator

configMarkers

java.util.List configMarkers
Configuration markers

tabName

java.lang.String tabName
Name of this tab

Class jigcell.compare.ui.ProgressMonitor extends javax.swing.JOptionPane implements Serializable

Serialized Fields

cancel

java.lang.Object[] cancel
Text to use for cancel button

parent

java.awt.Component parent
Owner of this monitor

dialog

javax.swing.JDialog dialog
Progress monitor dialog

progress

javax.swing.JProgressBar progress
Progress bar

timer

javax.swing.Timer timer
Timer to display monitor dialog

Class jigcell.compare.ui.SeriesDialog extends ViewerDialog implements Serializable

Serialized Fields

table

BasicTable table
Current table

element

IDataElement element
DataElement being viewed

generator

IDataGenerator generator
Generator for the element being viewed

checker

ITypeChecker checker
Type checker for the element

popup

javax.swing.JPopupMenu popup
Context menu

menuManager

MenuBuilder menuManager
Menu manager

popupPoint

java.awt.Point popupPoint
Location of last popup invocation

newModel

SeriesDialog.SeriesModel newModel
Model of current table

Class jigcell.compare.ui.SeriesDialog.SeriesModel extends BasicTable.BasicTableModel implements Serializable

Serialized Fields

COLUMN_NAME

BasicTable.BasicTableModel.Marker COLUMN_NAME
Name column

COLUMN_VALUE

BasicTable.BasicTableModel.Marker COLUMN_VALUE
Value column

Class jigcell.compare.ui.SeriesEditorDialog extends SeriesDialog implements Serializable

Serialized Fields

element

IEditableDataElement element
DataElement being edited

generator

IEditableDataGenerator generator
Generator for the element being edited

newModel

SeriesEditorDialog.SeriesEditorModel newModel
Model of current table

Class jigcell.compare.ui.SeriesEditorDialog.SeriesEditorModel extends SeriesDialog.SeriesModel implements Serializable

Class jigcell.compare.ui.ViewerDialog extends javax.swing.JDialog implements Serializable

Serialized Fields

model

BasicTable.BasicTableModel model
Data model of the parent table

compare

Compare compare
Associated comparator

column

int column
Column in the parent table

initialHeight

int initialHeight
Initial height of dialog in pixels

initialWidth

int initialWidth
Initial width of dialog in pixels

row

int row
Row in the parent table

area

javax.swing.JTextArea area
Editor control

Package jigcell.compare.views

Class jigcell.compare.views.BasicTableView extends DataEditorPanelTab implements Serializable

Serialized Fields

table

BasicTable table
Display

model

BasicTable.BasicTableModel model
Data model

clipboard

ClipboardDataSource clipboard
Clipboard to use

popup

javax.swing.JPopupMenu popup
Context menu

popupPoint

java.awt.Point popupPoint
Location of last popup invocation

printer

PrinterDataSource printer
Printer to use

lastSearchName

java.lang.String lastSearchName
Last name searched for

selectionGroup

java.lang.String selectionGroup
Selection group to be a part of

Class jigcell.compare.views.Console extends PanelTab implements Serializable

Serialized Fields

output

javax.swing.JTextArea output
Text display for evaluation output

input

javax.swing.JTextField input
Text box for command input

printer

java.io.PrintStream printer
Text printer

reader

java.io.Reader reader
Data coming in through the printer

inputChannel

EDU.oswego.cs.dl.util.concurrent.SynchronousChannel inputChannel
Channel for sending console input to the evaluator

outputChannel

EDU.oswego.cs.dl.util.concurrent.SynchronousChannel outputChannel
Channel for sending output to the display

Class jigcell.compare.views.EditableSeriesView extends SeriesView implements Serializable

Serialized Fields

model

EditableSeriesView.EditableSeriesModel model
Data model of the generators

plotter

IPlotter plotter
Plotter

Class jigcell.compare.views.EditableSeriesView.EditableSeriesModel extends SeriesView.SeriesModel implements Serializable

Class jigcell.compare.views.EvaluationErrorViewer extends javax.swing.JDialog implements Serializable

Serialized Fields

table

BasicTable table
Table

model

EvaluationErrorViewer.ErrorModel model
Table model

errorRecord

EvaluationErrorViewer.ErrorRecord errorRecord
Next error to add to the viewer

manager

InterfaceBuilder manager
Interface manager for this viewer

owner

ITab owner
The tab that launched this error viewer

errors

java.util.List errors
Errors that this viewer has detected

viewables

java.util.List viewables
Objects that this viewer is monitoring

LOCK_ERRORRECORD

java.lang.Object LOCK_ERRORRECORD
Lock to prevent concurrent access on errorRecord

Class jigcell.compare.views.ObjectiveEditor extends ProgrammableDataGeneratorEditor implements Serializable

Serialized Fields

metricModel

ListComboBoxModel metricModel
Model for metrics

Class jigcell.compare.views.ObjectiveSeriesView extends EditableSeriesView implements Serializable

Serialized Fields

objectives

IDataGeneratorList objectives
List of known objectives

objectiveModel

ListComboBoxModel objectiveModel
Display for list of known objectives

model

ObjectiveSeriesView.ObjectiveSeriesModel model
Data model of the generators

Class jigcell.compare.views.ObjectiveSeriesView.ObjectiveSeriesModel extends EditableSeriesView.EditableSeriesModel implements Serializable

Serialized Fields

COLUMN_COMPARISONTYPE

BasicTable.BasicTableModel.Marker COLUMN_COMPARISONTYPE
Comparison type column

COLUMN_OBJECTIVE

BasicTable.BasicTableModel.Marker COLUMN_OBJECTIVE
Objective column

COLUMN_OBJECTIVEVALUE

BasicTable.BasicTableModel.Marker COLUMN_OBJECTIVEVALUE
Objective value column

COLUMN_THRESHOLD

BasicTable.BasicTableModel.Marker COLUMN_THRESHOLD
Threshold column

objectiveResultFormat

java.text.DecimalFormat objectiveResultFormat
Formatter for objective result

Class jigcell.compare.views.ObjectiveSeriesView.ObjectiveSeriesRenderer extends BasicTable.BasicRenderer implements Serializable

Serialized Fields

centerTextLabels

boolean centerTextLabels
Whether to center a text label

Class jigcell.compare.views.ProgrammableDataGeneratorEditor extends DataEditorPanelTab implements Serializable

Serialized Fields

localObjects

IDataGeneratorList localObjects
List of objects created in this editor

objects

IDataGeneratorList objects
List of known objects

primitives

IDataGeneratorList primitives
List of primitives to build objects out of

customizer

javax.swing.JViewport customizer
Customizer for object

localNames

java.util.List localNames
List of object names created in this editor

names

java.util.List names
Selectable object names

objectModel

ListComboBoxModel objectModel
Model for object list

NAME_CUSTOMIZERS

java.lang.String NAME_CUSTOMIZERS
Name for customizers requested by this component

propertyKey

java.lang.String propertyKey
Edit property key to advertise in events

resourceKey

java.lang.String resourceKey
Resource key to advertise in events

Class jigcell.compare.views.SeriesView extends BasicTableView implements Serializable

Serialized Fields

generators

IDataGeneratorList generators
List of displayed generators

textCutoff

int textCutoff
Column to cutoff excessively long values at

model

SeriesView.SeriesModel model
Data model of the generators

Class jigcell.compare.views.SeriesView.SeriesModel extends BasicTable.BasicTableModel implements Serializable

Serialized Fields

COLUMN_COMMENT

BasicTable.BasicTableModel.Marker COLUMN_COMMENT
Comment column

COLUMN_NAME

BasicTable.BasicTableModel.Marker COLUMN_NAME
Name column

COLUMN_VALUE

BasicTable.BasicTableModel.Marker COLUMN_VALUE
Value column

generators

IDataGeneratorList generators
List of displayed generators

Class jigcell.compare.views.SeriesView.SeriesViewTransferer extends Transferer implements Serializable

Serialized Fields

exception

ExceptionRecorder exception
Cached exception recorder for this transferer

generators

IDataGeneratorList generators
List of displayed generators

model

SeriesView.SeriesModel model
Model for the data

Class jigcell.compare.views.TransformDebugger extends PanelTab implements Serializable

Serialized Fields

annotationModel

TransformDebugger.AnnotationModel annotationModel
Tabular display of transform annotations

preventSelectionUpdate

boolean preventSelectionUpdate
Prevent automatic selection updating

debugThread

TransformDebugger.DebuggerThread debugThread
Thread for executing play events

root

javax.swing.tree.DefaultMutableTreeNode root
Root of the transform tree

treeModel

javax.swing.tree.DefaultTreeModel treeModel
Transform tree model

debugValue

IDataElement debugValue
Value being debugged

transformValue

IDataElement transformValue
Value for the currently selected transform

debugTransform

ITransform debugTransform
Transform being debugged

transformCursor

ITransform transformCursor
Currently selected transform

transformAnnotation

ITransformAnnotation transformAnnotation
Annotation for the currently selected transform

classLabel

javax.swing.JLabel classLabel
Label displaying the type of the currently selected transform

nameLabel

javax.swing.JLabel nameLabel
Label displaying the name of the currently selected transform

splitter

javax.swing.JSplitPane splitter
Splitter between tree and display

tree

javax.swing.JTree tree
Transform tree model

customizer

javax.swing.JViewport customizer
Panel for transform customizers

transformMap

java.util.Map transformMap
Map from transforms to tree nodes

menuManager

MenuBuilder menuManager
Menu manager

stopDebuggingRunnable

java.lang.Runnable stopDebuggingRunnable
Stops debugging

updateDisplayRunnable

java.lang.Runnable updateDisplayRunnable
Updates the display based on debug information

traceSet

java.util.Set traceSet
Set of elements identified as connected to the transform cursor

valueModel

TransformDebugger.ValueModel valueModel
Tabular display of transform values

Class jigcell.compare.views.TransformDebugger.AnnotationModel extends BasicTable.BasicTableModel implements Serializable

Serialized Fields

COLUMN_ANNOTATION

BasicTable.BasicTableModel.Marker COLUMN_ANNOTATION
Annotation column

COLUMN_POSITION

BasicTable.BasicTableModel.Marker COLUMN_POSITION
Position column

COLUMN_TYPE

BasicTable.BasicTableModel.Marker COLUMN_TYPE
Type column

Class jigcell.compare.views.TransformDebugger.TransformTreeRenderer extends javax.swing.tree.DefaultTreeCellRenderer implements Serializable

Class jigcell.compare.views.TransformDebugger.ValueModel extends BasicTable.BasicTableModel implements Serializable

Serialized Fields

COLUMN_POSITION

BasicTable.BasicTableModel.Marker COLUMN_POSITION
Position column

COLUMN_VALUE

BasicTable.BasicTableModel.Marker COLUMN_VALUE
Value column

Class jigcell.compare.views.TransformEditor extends ProgrammableDataGeneratorEditor implements Serializable

Overview  Package  Class  Use  Tree  Deprecated  Index  Help 
 PREV   NEXT FRAMES    NO FRAMES