jigcell.compare.compare2
Class ThresholdRelativeViewColorer

java.lang.Object
  java.awt.Component
      java.awt.Container
          javax.swing.JComponent
              javax.swing.JLabel
                  javax.swing.table.DefaultTableCellRenderer
                      jigcell.compare.ui.BasicTable.BasicRenderer
                          jigcell.compare.compare2.ViewColorer
                              jigcell.compare.compare2.TriColorViewColorer
                                  jigcell.compare.compare2.ThresholdRelativeViewColorer

All Implemented Interfaces:

java.awt.image.ImageObserver, java.awt.MenuContainer, java.beans.PropertyChangeListener, java.io.Serializable, java.util.EventListener, javax.accessibility.Accessible, javax.swing.SwingConstants, javax.swing.table.TableCellRenderer, IViewColorer

public class ThresholdRelativeViewColorer
extends TriColorViewColorer

A table renderer that can color the view of a Compare^2. The coloring policy is to color by the relative order from the threshold.

This code is licensed under the DARPA BioCOMP Open Source License. See LICENSE for more details.

Author:

Nicholas Allen

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.table.DefaultTableCellRenderer

javax.swing.table.DefaultTableCellRenderer.UIResource

Nested classes/interfaces inherited from class javax.swing.JLabel

javax.swing.JLabel.AccessibleJLabel

Nested classes/interfaces inherited from class javax.swing.JComponent

javax.swing.JComponent.AccessibleJComponent

Nested classes/interfaces inherited from class java.awt.Container

java.awt.Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component

java.awt.Component.AccessibleAWTComponent, java.awt.Component.BltBufferStrategy, java.awt.Component.FlipBufferStrategy

Field Summary

protected int	groups Number of groups to divide into
protected static float	TRANSPARENCY_ADJUST Transparency adjustment value

Fields inherited from class jigcell.compare.compare2.TriColorViewColorer

CONFIG_BACKGROUNDUNDERTHRESHOLD, DEFAULT_BACKGROUNDOVERTHRESHOLD, DEFAULT_BACKGROUNDUNDERTHRESHOLD, DEFAULT_TRANSPARENCY

Fields inherited from class jigcell.compare.compare2.ViewColorer

mode, model

Fields inherited from class jigcell.compare.ui.BasicTable.BasicRenderer

CONFIG_BACKGROUNDEDITABLE, CONFIG_BACKGROUNDUNEDITABLE, DEFAULT_BACKGROUNDEDITABLE, DEFAULT_BACKGROUNDUNEDITABLE

Fields inherited from class javax.swing.table.DefaultTableCellRenderer

noFocusBorder

Fields inherited from class javax.swing.JLabel

labelFor

Fields inherited from class javax.swing.JComponent

accessibleContext, listenerList, TOOL_TIP_TEXT_KEY, ui, UNDEFINED_CONDITION, WHEN_ANCESTOR_OF_FOCUSED_COMPONENT, WHEN_FOCUSED, WHEN_IN_FOCUSED_WINDOW

Fields inherited from class java.awt.Component

BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface jigcell.compare.compare2.IViewColorer

METHOD_GENERATE, MODE_RANKINGS, MODE_VALUES

Fields inherited from interface javax.swing.SwingConstants

BOTTOM, CENTER, EAST, HORIZONTAL, LEADING, LEFT, NEXT, NORTH, NORTH_EAST, NORTH_WEST, PREVIOUS, RIGHT, SOUTH, SOUTH_EAST, SOUTH_WEST, TOP, TRAILING, VERTICAL, WEST

Fields inherited from interface java.awt.image.ImageObserver

ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

ThresholdRelativeViewColorer(Compare2 view, int groups)
Creates a new view colorer that colors by relative distances to threshold.

Method Summary

java.awt.Color	getColorForCell(javax.swing.JTable table, int row, int column, int data, double result) The color of a cell as it will appear in the table.
int	getGroups() The number of groups to divide the cells into.
static java.lang.Object	getInstances(Compare2 view) A single or collection of colorers that can color a view.
java.lang.String	getName() The name of this renderer.
void	setGroups(int groups) Sets the number of groups to divide cells into.

Methods inherited from class jigcell.compare.compare2.TriColorViewColorer

getColorForCell, getColorForHistoryComparison, getColorForThresholdComparison, readConfiguration

Methods inherited from class jigcell.compare.compare2.ViewColorer

convertColumnIndexToData, getColorForCell, getDataValueAt, getDataValues, getTableCellRendererComponent, propertyChange, setDisplayMode

Methods inherited from class jigcell.compare.ui.BasicTable.BasicRenderer

getColor, getColorFromConfig, putColor

Methods inherited from class javax.swing.table.DefaultTableCellRenderer

firePropertyChange, firePropertyChange, invalidate, isOpaque, repaint, repaint, repaint, revalidate, setBackground, setForeground, setValue, updateUI, validate

Methods inherited from class javax.swing.JLabel

checkHorizontalKey, checkVerticalKey, getAccessibleContext, getDisabledIcon, getDisplayedMnemonic, getDisplayedMnemonicIndex, getHorizontalAlignment, getHorizontalTextPosition, getIcon, getIconTextGap, getLabelFor, getText, getUI, getUIClassID, getVerticalAlignment, getVerticalTextPosition, imageUpdate, paramString, setDisabledIcon, setDisplayedMnemonic, setDisplayedMnemonic, setDisplayedMnemonicIndex, setHorizontalAlignment, setHorizontalTextPosition, setIcon, setIconTextGap, setLabelFor, setText, setUI, setVerticalAlignment, setVerticalTextPosition

Methods inherited from class javax.swing.JComponent

addAncestorListener, addNotify, addVetoableChangeListener, computeVisibleRect, contains, createToolTip, disable, enable, firePropertyChange, firePropertyChange, fireVetoableChange, getActionForKeyStroke, getActionMap, getAlignmentX, getAlignmentY, getAncestorListeners, getAutoscrolls, getBorder, getBounds, getClientProperty, getComponentGraphics, getComponentPopupMenu, getConditionForKeyStroke, getDebugGraphicsOptions, getDefaultLocale, getFontMetrics, getGraphics, getHeight, getInheritsPopupMenu, getInputMap, getInputMap, getInputVerifier, getInsets, getInsets, getListeners, getLocation, getMaximumSize, getMinimumSize, getNextFocusableComponent, getPopupLocation, getPreferredSize, getRegisteredKeyStrokes, getRootPane, getSize, getToolTipLocation, getToolTipText, getToolTipText, getTopLevelAncestor, getTransferHandler, getVerifyInputWhenFocusTarget, getVetoableChangeListeners, getVisibleRect, getWidth, getX, getY, grabFocus, isDoubleBuffered, isLightweightComponent, isManagingFocus, isOptimizedDrawingEnabled, isPaintingTile, isRequestFocusEnabled, isValidateRoot, paint, paintBorder, paintChildren, paintComponent, paintImmediately, paintImmediately, print, printAll, printBorder, printChildren, printComponent, processComponentKeyEvent, processKeyBinding, processKeyEvent, processMouseEvent, processMouseMotionEvent, putClientProperty, registerKeyboardAction, registerKeyboardAction, removeAncestorListener, removeNotify, removeVetoableChangeListener, requestDefaultFocus, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resetKeyboardActions, reshape, scrollRectToVisible, setActionMap, setAlignmentX, setAlignmentY, setAutoscrolls, setBorder, setComponentPopupMenu, setDebugGraphicsOptions, setDefaultLocale, setDoubleBuffered, setEnabled, setFocusTraversalKeys, setFont, setInheritsPopupMenu, setInputMap, setInputVerifier, setMaximumSize, setMinimumSize, setNextFocusableComponent, setOpaque, setPreferredSize, setRequestFocusEnabled, setToolTipText, setTransferHandler, setUI, setVerifyInputWhenFocusTarget, setVisible, unregisterKeyboardAction, update

Methods inherited from class java.awt.Container

add, add, add, add, add, addContainerListener, addImpl, addPropertyChangeListener, addPropertyChangeListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalKeys, getFocusTraversalPolicy, getLayout, getMousePosition, insets, isAncestorOf, isFocusCycleRoot, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, printComponents, processContainerEvent, processEvent, remove, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusCycleRoot, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setLayout, transferFocusBackward, transferFocusDownCycle, validateTree

Methods inherited from class java.awt.Component

action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, createImage, createImage, createVolatileImage, createVolatileImage, disableEvents, dispatchEvent, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBackground, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusCycleRootAncestor, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getForeground, getGraphicsConfiguration, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputContext, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocale, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getToolkit, getTreeLock, gotFocus, handleEvent, hasFocus, hide, inside, isBackgroundSet, isCursorSet, isDisplayable, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isShowing, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, postEvent, prepareImage, prepareImage, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processMouseWheelEvent, remove, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, resize, resize, setBounds, setBounds, setComponentOrientation, setCursor, setDropTarget, setFocusable, setFocusTraversalKeysEnabled, setIgnoreRepaint, setLocale, setLocation, setLocation, setName, setSize, setSize, show, show, size, toString, transferFocus, transferFocusUpCycle

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

TRANSPARENCY_ADJUST

protected static final float TRANSPARENCY_ADJUST

Transparency adjustment value

See Also:

Constant Field Values

groups

protected int groups

Number of groups to divide into

Constructor Detail

ThresholdRelativeViewColorer

public ThresholdRelativeViewColorer(Compare2 view,
                                    int groups)

Creates a new view colorer that colors by relative distances to threshold.

Parameters:

view - View to color

groups - Number of groups

Method Detail

getInstances

public static java.lang.Object getInstances(Compare2 view)

A single or collection of colorers that can color a view.

Parameters:

view - View

getColorForCell

public java.awt.Color getColorForCell(javax.swing.JTable table,
                                      int row,
                                      int column,
                                      int data,
                                      double result)

The color of a cell as it will appear in the table. A null result indicates the default color should be used.

Specified by:

getColorForCell in class TriColorViewColorer

Parameters:

table - Table to appear in

row - Value row

column - Value column in table

data - Value column in data

result - Objective result

getGroups

public int getGroups()

The number of groups to divide the cells into.

getName

public java.lang.String getName()

The name of this renderer.

Specified by:

getName in interface IViewColorer

Overrides:

getName in class ViewColorer

setGroups

public void setGroups(int groups)

Sets the number of groups to divide cells into.

Parameters:

groups - Number of groups