Links to Related Sites
JigCell is funded in part by the DARPA BioSPICE project.
JigCell is a joint effort by members of the Departments of Biology and Computer Science at Virginia Tech.
Much of this work is done in the Tyson Lab.
JigCell is one of several projects related to Problem Solving Environments (PSE) research at Virginia Tech.
Modeling Languages
- JigCell uses the Systems Biology Markup Language (SBML) as its native input/output language for models.
- An alternative model description language to SBML is CellML.
Models
- See the SBML Model Repository for additional examples of biochemical pathway models.
- Another catalog of example models and usecases can be found at the DARPA BioSPICE website.
Software
- XPP-Aut
- Systems Biology Workshop (SBW)
- SBML parsers and specs
- Lahey FORTRAN
- LSODAR
- ODRPACK
- VTDIRECT
- Subversion version control system